Due to previously mentioned technical difficulties, I found attempting to edit on Premier - which was continually loosing render files - impossible.
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The Project after immigration to Final Cut Express
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In response to this sticky situation, I brought my own Macbook Pro into school last Tuesday and spent a solid 5 hours moving clips from the Media iMac onto my Macbook, then using time-codes from the Premier file to A) Trim each and every clip as it was and B) Position it in the exact same location in the timeline.
Due to a slight change in the location of the soundtrack in the Final Cut project file, each clip was slightly out of time and needed tailored positioning. However this painfully slow process paid off - each and every clip is now in perfect sync, whereas the Premier file had some issues with syncing.
I will now continue to use After Effects for compositing on the Media iMac, however I will use Final Cut Express to edit the music video. In addition to this, I have stopped using Blender to render files for the music video on the iMac and have begun using Blender for this purpose on my Macbook at home - which has almost tripled render speeds, as it is a faster computer.
Due to all these changes, I think it's almost a happy accident that the Premier file became faulty... the benefits from moving the clips onto the Macbook are near-overwhelming, as my personal preference favours Final Cut anyway.